1/17/2024 0 Comments Annotate text matplotlibIf False, the annotation willĪlways be drawn regardless of its position. If True, the annotation will only be drawn when the Head_length=0.5,head_width=0.5,tail_width=0.2Ĭontrols the visibility of the annotation when it goes If the arrowprops contains the key 'arrowstyle' theĪbove keys are forbidden. The width of the base of the arrow head in pointsįraction of total length to ‘shrink’ from both endsĪny key to If arrowprops does not contain the key 'arrowstyle' the Textcoords : str, Artist, Transform, callable or tuple, optional See Advanced Annotation for more details. Used for the x coordinate and the second for y. If a tuple must be length 2 tuple of str, Artist, In use that to transform xy to screen coordinates If a Artist object is passed in the units are (theta,r) if not native ‘data’ coordinates Use the coordinate system of the object being I'm also using the test data that the creators of TOBIAS provide when running this command, so this error is likely not resulting from an error with the files I am providing as inputs to the command.The coordinate system that xy is given in.įor a str the allowed values are: Property I tried uninstalling and reinstalling matplotlib using pip ( pip uninstall matplotlib and pip install matplotlib, respectively), but I still get the same error. I tried upgrading matplotlib using pip install -upgrade matplotlib but I already have the latest version, 3.7.1. Text._init_(self, x, y, text, **kwargs)įile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/_api/deprecation.py", line 454, in wrapperįile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/text.py", line 183, in _init_įile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/text.py", line 231, in updateįile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/artist.py", line 1213, in updateįile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/artist.py", line 1197, in _update_propsĪttributeError: 'Annotation' object has no property 'text_from_points' 08:54:45 (488) - Bcell / Tcell (static plot)įile "/home/usrname/.local/bin/TOBIAS", line 8, in įile "/home/usrname/.local/lib/python3.10/site-packages/tobias/TOBIAS.py", line 154, in mainįile "/home/usrname/.local/lib/python3.10/site-packages/tobias/tools/bindetect.py", line 819, in run_bindetectįig = plot_bindetect(motif_list, clustering,, args)įile "/home/usrname/.local/lib/python3.10/site-packages/tobias/tools/bindetect_functions.py", line 769, in plot_bindetectĪdjust_text(txts, ax=ax1, add_objects=, text_from_points=True, arrowprops=dict(arrowstyle='-', color='black', lw=0.5)) #, expand_text=(0.1,1.2), expand_objects=(0.1,0.1))įile "/home/usrname/.local/lib/python3.10/site-packages/adjustText/_init_.py", line 730, in adjust_textįile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/axes/_axes.py", line 699, in annotateĪ = mtext.Annotation(text, xy, xytext=xytext, xycoords=xycoords,įile "/home/usrname/.local/lib/python3.10/site-packages/matplotlib/text.py", line 1885, in _init_ However, I get the following error in my output: 08:54:45 (488) Writing all_bindetect files TOBIAS BINDetect -motifs test_data/motifs.jaspar -signals test_data/Bcell_footprints.bw test_data/Tcell_footprints.bw -genome test_data/genome.fa -peaks test_data/merged_peaks_annotated.bed -peak_header test_data/merged_peaks_annotated_header.txt -outdir BINDetect_test -cond_names Bcell Tcell -cores 4 I tried to run the last step of the pipeline, BINDetect, using the following command: I am attempting to run TOBIAS, a collection of command-line bioinformatics tools, to analyze my sequencing data from ATAC-seq.
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